i'm in the process of getting a custom ECU reflash through a buddy of mine's race shop. not only will he take your custom made pc3/pc5/bazzaz map and convert it, he'll smooth it, modify the throttle positions that you didn't used to have access to, change the settings for engine braking and everything. the supersport they're running in AMA this season pulls on the straights on stock ecu'ed built-motor'ed bikes. i've seen it.
my bazzaz setup - zfi and afm cost me ~$600 new. this reflash will allow me to get rid of this (also i'll lose the autotune feature, but i'm fine with that), and it's ~$100, depending on how long it takes to input/convert your current map.
. tell em agg sent ya, if you call on em. even to chat about what they can do.
edit: btw, me and bauce are both running r6 bikes, so it might be slightly different for you.