There are 2 connectors under the seat.
The loose single wire coloured orange/black is referred to in the Wiring Diagram as the Self Diagnosis Terminal and as the name implies forms part of the trouble shooting procedure for the Fuel Injection (FI) system. Briefly when this connector is grounded in a particular sequence the FI light flashes a fault code indicating the item at fault or in another mode a previous fault that is stored in the ECU memory.
The other mounted connector has four wires coloured Light Blue/Black, Black/Yellow, Brown/White and Light Green/White (six wires on ABS models). Kawasaki refers to this plug as the Self Diagnosis System Connector and although no indication of its purpose appears anywhere in either the Ninja 650R (ER-6F) or the ER-6N Service Manual it would appear that this connector is used in conjunction with a dealer tool called the Kawasaki Diagnostic System (KDS).
The KDS 3.0 (until 2007 KDS 2.0) is a software program run from a computer in conjunction with cables and a adapter which are connected to the bike via the Self Diagnosis System Connector. The program can be used by the dealer to do the following:
1. Display ECU and model information.
2. Perform system diagnostics.
3. Display, save, and print service data.
4. Actuate individual injectors and other actuators.
5. Display, save, and print real-time sensor values.
6. Display and print graphs (real-time sensor values).
7. Erase stored service data.
On ABS models KDS 3.0 can be used to diagnose ABS faults and clear stored data in the ABS ECU. The KDS 3.0 unit can be purchased through your dealer or online and the kit comprises:
KDS 3.0 Adapter – (P/N 57001-1648) – Cost approx US$1,040.00
KDS 3.0 Software CD-ROM – (P/N 57001-1650) – Cost approx US$65.00
Comm. Cable 8-pin – (P/N 57001-1649) – Cost approx US$55.00
Comm. Cable 4-pin – (P/N 57001-1688) – Cost approx US$55.00
USB Cable – (P/N C57001-0017) – Cost approx US$20.00
KDS 3.0 User Manual – (P/N 99929-0154-02) - Cost approx US$9.00
In some countries a restriction on engine horsepower (33 hp) is required for new riders. Information is sketchy but the restrictor modification appears to be two parts, an electrical modification utilising the Self Diagnosis System Connector and a screw restricting full rotation of the pulley at the throttle body.
Another use of the Self Diagnosis System Connector appears to be in the fitment of the Gear Indicator accessory.