Golden Gate Cycles ( 415-771-4535 / 1540 Pine Street) has all four manufactures under one roof. Kawasaki, Honda, Suzuki and Yamaha with a pretty damn good inventory. Parking is via garage, upstairs, right above the shop. Very convenient. Great shop to go and kick tires.
Their parts shop is decent, but a little small.
The Cycle Gear in SF (415-546-0212 / 2nd and Townsend) is huge (one of the biggest in the Bay Area , but San Jose is bigger) and it's right by Pac Bell Park. Parking is metered and on the street, a tad tough to find. Huge inventory though.
Enjoy your stay. And don't forget to ride over to the new SF Hooters.
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